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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69854607_69855207_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69854607 - 69855207
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAGGC
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTGTTCTTATTT
Flanking Amino Acid:
FLDPQSSCFETLMHFPWRTF
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.2
38.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.3
0.88
0.6
88.9
20.3
Minor 5ss
30.8
-2.2
3.3
42.3
44.5
Minor BPS
62
0.46
1.6
74.68
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012348
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012850
69833967 - 69863318
29352