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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69859353_69861921_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69859353 - 69861921
Intron Length:
2569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTGGGATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
GACACCTTATCT
Flanking Amino Acid:
TPDWGGTERIGSELREIQKM
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.2
28.3
Major BPS
70
0.5
1
59.6
38.6
Major PPT
65.4
0.35
1
55
44.6
Minor 5ss
40.6
-1
2.8
49.4
41.4
Minor BPS
59
0.36
1.7
70.98
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012348
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012850
69833967 - 69863318
29352