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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69862085_69863294_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69862085 - 69863294
Intron Length:
1210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTCCTGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATCAT
U12 Branch Point Sequence:
TCTTTGTGCATT
Flanking Amino Acid:
MFKMLPEKAALRALHLSL
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.2
90.9
28.7
Major BPS
68.1
0.45
1.1
69.7
35.6
Major PPT
72.9
0.52
0.9
65.5
36.1
Minor 5ss
37.1
-1.5
2.8
51.6
44.9
Minor BPS
43.8
-0.4
2.4
67.49
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012348
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012850
69833967 - 69863318
29352