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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69882500_69885515_R

Intron Information:

Intron Rank:
89404
Intron Class:
major
Intron Phase:
Intron Coordinates:
69882500 - 69885515
Intron Length:
3016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
CTACACGTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
77.9
30.9
Major BPS
68
0.45
1
57.8
39
Major PPT
85.6
0.8
0.7
80.2
25.1
Minor 5ss
43.9
-0.7
2.7
58.7
38.8
Minor BPS
45.2
-0.2
2.2
64.83
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012082
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012567
69871438 - 69905755
34318