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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69890962_69893944_R

Intron Information:

Intron Rank:
89408
Intron Class:
major
Intron Phase:
Intron Coordinates:
69890962 - 69893944
Intron Length:
2983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TGTTTCCTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.4
35
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
84.8
0.78
0.7
84.8
30
Minor 5ss
39
-1.2
3.1
47.7
42.3
Minor BPS
53.9
0.2
1.9
76.83
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012082
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012567
69871438 - 69905755
34318