About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69898310_69898441_R

Intron Information:

Intron Rank:
89415
Intron Class:
major
Intron Phase:
Intron Coordinates:
69898310 - 69898441
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
TGGTTCATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAAAT
U12 Branch Point Sequence:
TTCTGGTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
64.7
0.37
1.1
69.5
34.1
Major PPT
77.9
0.63
0.9
74.5
40
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
44.6
-0.3
2.7
70.75
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012082
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047200
69897072 - 69898567
1496