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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69898948_69901976_R

Intron Information:

Intron Rank:
89411
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
69898948 - 69901976
Intron Length:
3029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGGA
5'SS Class:
major
3'SS Sequence:
GTGTTGTAACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CAGTCTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
65.4
40.7
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
58.9
0.2
1.1
52.3
46.2
Minor 5ss
31.1
-2.2
3.3
41.5
44.9
Minor BPS
72.7
0.69
1.2
71.07
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012082
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012567
69871438 - 69905755
34318