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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69904022_69904382_R

Intron Information:

Intron Rank:
89413
Intron Class:
major
Intron Phase:
Intron Coordinates:
69904022 - 69904382
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTATGTCAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATGTCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
76.2
39.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67
0.38
1.1
60.3
44.9
Minor 5ss
41.8
-0.9
3.2
57.8
46.8
Minor BPS
49.8
-0
2.2
70.99
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012082
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012567
69871438 - 69905755
34318