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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69927014_69927424_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69927014 - 69927424
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGCCT
5'SS Class:
major
3'SS Sequence:
CTACATTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTTGCCTACATT
Flanking Amino Acid:
LEKKMVLEQQTQLQKENDQN
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
65.5
40
Major BPS
77.5
0.68
1
79.6
33
Major PPT
77.9
0.63
0.9
68.9
41.4
Minor 5ss
27.3
-2.6
3.3
39.3
46.1
Minor BPS
48.4
-0
2.2
70.75
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011913
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012408
69926849 - 69930147
3299