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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69927547_69928127_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69927547 - 69928127
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCTC
5'SS Class:
major
3'SS Sequence:
CTTCTCTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CTGTACTGAATG
Flanking Amino Acid:
AHQELMQQRKDISVQLNAAQ
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.7
39.5
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
81.8
0.72
0.7
77.4
24.6
Minor 5ss
44.9
-0.5
2.8
62
42.6
Minor BPS
51.6
-0
1.8
57.04
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011913
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012408
69926849 - 69930147
3299