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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69928308_69930005_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69928308 - 69930005
Intron Length:
1698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCCA
5'SS Class:
major
3'SS Sequence:
CATTGTTTGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TTAAATATAACT
Flanking Amino Acid:
VDEPSISNNQAVVAALRTLQ
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
65.6
40
Major BPS
69.1
0.48
1
70
32.1
Major PPT
67.8
0.4
1
61.8
44.2
Minor 5ss
30.4
-2.2
3.3
39.6
45.9
Minor BPS
53.5
0.19
1.8
76
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011913
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012408
69926849 - 69930147
3299