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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69942518_70003438_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69942518 - 70003438
Intron Length:
60921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TATATCCGAGCG
Flanking Amino Acid:
KSEAILSGVQELGIRIPRPL
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
62.3
43.9
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
32.7
-2
3
39.3
46.1
Minor BPS
42.6
-0.7
2
51.19
42.4

Associated Gene:

Gene:
SESN1
Ensembl Gene ID:
ENSAPLG00000011647
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033752
69942302 - 70011573
69272
ENSAPLT00000012186
69942302 - 70011573
69272