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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70003505_70004401_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70003505 - 70004401
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGGTGG
5'SS Class:
major
3'SS Sequence:
TCTGTTAACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTCTGTTAACA
Flanking Amino Acid:
GPSRFIPEKETIQVGNEDAM
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
59.1
42.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
71.1
0.48
1
65.7
38.9
Minor 5ss
36.8
-1.5
3.2
46.4
49
Minor BPS
64.8
0.46
2
80.35
35.4

Associated Gene:

Gene:
SESN1
Ensembl Gene ID:
ENSAPLG00000011647
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033752
69942302 - 70011573
69272
ENSAPLT00000012186
69942302 - 70011573
69272