About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70016264_70019067_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70016264 - 70019067
Intron Length:
2804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGATTC
5'SS Class:
major
3'SS Sequence:
TCCTTGATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTTTCCTTGATT
Flanking Amino Acid:
TLLVLLTSLLDEELVQDYSL
Intron Amino Acid Position:
828

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
72
34.3
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
78.9
0.65
0.9
72.3
36.6
Minor 5ss
36.6
-1.5
3.2
42.5
44.6
Minor BPS
89.6
1.33
0.7
99.24
21.9

Associated Gene:

Gene:
ARMC2
Ensembl Gene ID:
ENSAPLG00000011449
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011955
70016106 - 70080074
63969