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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70021654_70023071_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70021654 - 70023071
Intron Length:
1418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
CTTCACAATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTCTCCTTATCG
Flanking Amino Acid:
EICDFIVQKKIYKFVIALLD
Intron Amino Acid Position:
731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
77.7
33.3
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
69.1
0.43
1
59.5
40.5
Minor 5ss
42
-0.9
3
54.7
43.6
Minor BPS
71.8
0.55
1.7
75.16
43

Associated Gene:

Gene:
ARMC2
Ensembl Gene ID:
ENSAPLG00000011449
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011955
70016106 - 70080074
63969