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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70026937_70037111_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70026937 - 70037111
Intron Length:
10175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTTTCCTTATTT
Flanking Amino Acid:
ALLSKHQKQQDLVIRIIFIL
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.2
87.9
29.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
86.9
0.83
0.8
82
33.9
Minor 5ss
41.5
-0.9
2.9
58.8
45.7
Minor BPS
75.7
0.88
1.5
88.81
36.2

Associated Gene:

Gene:
ARMC2
Ensembl Gene ID:
ENSAPLG00000011449
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011955
70016106 - 70080074
63969