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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70037212_70039346_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70037212 - 70039346
Intron Length:
2135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTACCTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATATTTTATTT
Flanking Amino Acid:
DVCTYIVRIFSKLSSYDDFC
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
75.8
0.58
0.9
70
36.3
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
56.7
0.29
1.6
73.05
38.4

Associated Gene:

Gene:
ARMC2
Ensembl Gene ID:
ENSAPLG00000011449
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011955
70016106 - 70080074
63969