About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70044529_70048086_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70044529 - 70048086
Intron Length:
3558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GCTTTCTGAATA
Flanking Amino Acid:
DYIIQNDKLLDCLLEVLTTE
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
81.3
0.7
0.8
79.3
33.3
Minor 5ss
47.3
-0.3
2.5
60.3
44.3
Minor BPS
63.6
0.42
1.4
68.42
38.2

Associated Gene:

Gene:
ARMC2
Ensembl Gene ID:
ENSAPLG00000011449
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011955
70016106 - 70080074
63969