About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70058143_70067913_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70058143 - 70067913
Intron Length:
9771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTATCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATTCTGTTATAT
Flanking Amino Acid:
RFADEEQPFPCDQMRKPGVG
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.8
29.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
80
0.67
0.8
78.1
36.1
Minor 5ss
27.5
-2.6
2.7
28.2
37.3
Minor BPS
45.5
-0.2
2.3
68.71
42

Associated Gene:

Gene:
ARMC2
Ensembl Gene ID:
ENSAPLG00000011449
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011955
70016106 - 70080074
63969