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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70067965_70071236_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70067965 - 70071236
Intron Length:
3272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATATTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATATTTCAACA
Flanking Amino Acid:
GNFLFQLKGERSVTGDGRFA
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.2
90.9
28.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.9
0.56
1
70.4
39.7
Minor 5ss
37.1
-1.5
2.8
51.6
44.9
Minor BPS
59.1
0.28
1.5
69.26
36.8

Associated Gene:

Gene:
ARMC2
Ensembl Gene ID:
ENSAPLG00000011449
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011955
70016106 - 70080074
63969