About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70071448_70072638_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70071448 - 70072638
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTGGCTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TCCTGCAAAATA
Flanking Amino Acid:
FPAKMVPPDQNEEKLDSEEP
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
79
35.3
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
77.5
0.62
0.9
74.2
40.2
Minor 5ss
41.6
-0.9
2.8
51.4
39.2
Minor BPS
43.5
-0.5
2.2
55.21
44.4

Associated Gene:

Gene:
ARMC2
Ensembl Gene ID:
ENSAPLG00000011449
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011955
70016106 - 70080074
63969