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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70075116_70076391_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70075116 - 70076391
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACAGTGA
5'SS Class:
major
3'SS Sequence:
TTCTTTATCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
GCTTCTTTATCC
Flanking Amino Acid:
APQNRPPSVFSVHASSFDLA
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
60.1
41.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
79.8
0.67
0.8
73.9
35.4
Minor 5ss
34.4
-1.8
3.5
47.2
48.2
Minor BPS
65
0.45
1.6
70.66
41

Associated Gene:

Gene:
ARMC2
Ensembl Gene ID:
ENSAPLG00000011449
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011955
70016106 - 70080074
63969