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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70155058_70166039_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
70155058 - 70166039
Intron Length:
10982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTCTCACAATC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.2
76.7
33.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
85.4
0.8
0.7
77.3
31.4
Minor 5ss
29.4
-2.4
2.9
36.5
40.5
Minor BPS
51.2
0.02
1.8
68.94
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011319
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011774
70154058 - 70231308
77251