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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70256069_70257452_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70256069 - 70257452
Intron Length:
1384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
AGGTGTTGAATA
Flanking Amino Acid:
TLIDTFYEHKVRIICSAVTP
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.7
30.1
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
93.2
0.97
0.6
92.2
18.2
Minor 5ss
29.3
-2.4
2.8
35.3
40.9
Minor BPS
47.2
-0.2
1.8
54.95
38.3

Associated Gene:

Gene:
AFG1L
Ensembl Gene ID:
ENSAPLG00000011261
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011725
70255087 - 70317418
62332