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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70257594_70273169_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70257594 - 70273169
Intron Length:
15576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
GTTTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTCTGTTTCACA
Flanking Amino Acid:
DFTFEELCDRPLGASDYLEI
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.6
36.4
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
86.7
0.82
0.8
84.6
36
Minor 5ss
32.8
-2
2.6
34.8
34.3
Minor BPS
52.5
0.07
2.2
70.26
42.8

Associated Gene:

Gene:
AFG1L
Ensembl Gene ID:
ENSAPLG00000011261
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011725
70255087 - 70317418
62332