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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70276851_70292049_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70276851 - 70292049
Intron Length:
15199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGGAA
U12 Branch Point Sequence:
TTTGGCTTGAGG
Flanking Amino Acid:
NFVPFIAVLKKYCSTVQLDS
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
44.2
-0.3
1.4
37.5
42.1
Major PPT
78.8
0.65
0.8
73.8
31.3
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
48.3
-0.2
2.3
62.04
46.3

Associated Gene:

Gene:
AFG1L
Ensembl Gene ID:
ENSAPLG00000011261
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011725
70255087 - 70317418
62332