About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70292109_70294571_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70292109 - 70294571
Intron Length:
2463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGGTACTGATTT
Flanking Amino Acid:
VVATSNRPPEDLYKNGLQRA
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
93.2
0.97
0.6
92.2
18.2
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
48
-0
1.9
66.77
43.8

Associated Gene:

Gene:
AFG1L
Ensembl Gene ID:
ENSAPLG00000011261
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011725
70255087 - 70317418
62332