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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70294672_70300294_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70294672 - 70300294
Intron Length:
5623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
GATAAAACAAAT
Flanking Amino Acid:
ASLLCFDEFQVTDIADAMIL
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
85.8
0.81
0.8
81.2
30.8
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
36.6
-0.9
2
52.83
40.2

Associated Gene:

Gene:
AFG1L
Ensembl Gene ID:
ENSAPLG00000011261
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011725
70255087 - 70317418
62332