About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70302454_70311242_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70302454 - 70311242
Intron Length:
8789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTTCTTGATT
Flanking Amino Acid:
TISSKNLLSKLFAQNKPPKG
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
77.6
33.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.2
0.75
0.8
77.1
36.1
Minor 5ss
37
-1.5
3.5
55.2
49
Minor BPS
76.3
0.91
1.1
86.06
34.4

Associated Gene:

Gene:
AFG1L
Ensembl Gene ID:
ENSAPLG00000011261
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011725
70255087 - 70317418
62332