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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70340331_70341932_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70340331 - 70341932
Intron Length:
1602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCCGTTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATAAC
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
QLTLNSYIHTRYPTQPCRFG
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.3
39.5
Major BPS
57.8
0.19
1.1
59.6
32.6
Major PPT
76
0.59
0.8
67.7
37.7
Minor 5ss
30.6
-2.2
3.4
39.1
46.7
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021471
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019719
70340168 - 70342933
2766