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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70398398_70399485_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70398398 - 70399485
Intron Length:
1088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTCTCTTTGACA
Flanking Amino Acid:
NETWEAANCANCLKNNSEGL
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
81.8
0.71
0.9
79.3
32.7
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
78.7
0.9
1.1
82.02
33.2

Associated Gene:

Gene:
OSTM1
Ensembl Gene ID:
ENSAPLG00000010663
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011098
70396588 - 70402391
5804