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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70399584_70400890_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70399584 - 70400890
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
TCTGTAACCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAC
U12 Branch Point Sequence:
TGTTCTGTAACC
Flanking Amino Acid:
SLTCFEHNLQGQAIDESPNN
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.3
38.9
Major BPS
67.4
0.43
1
73.2
28.9
Major PPT
64.9
0.34
0.9
56.1
39
Minor 5ss
45.5
-0.5
2.5
59.8
44.7
Minor BPS
65.8
0.48
2
78.83
36.8

Associated Gene:

Gene:
OSTM1
Ensembl Gene ID:
ENSAPLG00000010663
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011098
70396588 - 70402391
5804