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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70444480_70446587_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70444480 - 70446587
Intron Length:
2108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TTTTTGAAATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTAACTTAATA
Flanking Amino Acid:
MFMRIAKAYAALTDEESRKN
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.3
66.7
40.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
68.4
0.42
1
68.9
41
Minor 5ss
42.4
-0.8
2.7
49.6
39.8
Minor BPS
68.2
0.57
1.5
75.94
34.7

Associated Gene:

Gene:
SEC63
Ensembl Gene ID:
ENSAPLG00000010176
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010671
70440699 - 70478410
37712