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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70449075_70449814_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70449075 - 70449814
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TAACTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TGTTTCATAACT
Flanking Amino Acid:
WIVDQKNSIWVLFVYGLAFM
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74
38.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
81.4
0.71
0.9
73.3
41.4
Minor 5ss
30
-2.3
2.9
32.9
41.9
Minor BPS
73.5
0.82
1.6
89.66
34

Associated Gene:

Gene:
SEC63
Ensembl Gene ID:
ENSAPLG00000010176
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010671
70440699 - 70478410
37712