Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70452647_70455102_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

70452647 - 70455102

Intron Length:

2456

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGTGAA

5'SS Class:

major

3'SS Sequence:

ATTGTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTGAA

U12 Branch Point Sequence:

TTGTCTCCCATT

Flanking Amino Acid:

VYKTRNMDMKRLIMVLAGAS

Intron Amino Acid Position:

105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

1.3

77.6

32.8

Major BPS

79.4

0.73

0.9

69.6

37.5

Major PPT

83.6

0.76

0.8

77.6

36.1

Minor 5ss

33.4

-1.9

3.2

39.2

39.9

Minor BPS

44.8

-0.3

2.2

68.36

43.2

Associated Gene:

Gene:

SEC63

Ensembl Gene ID:

ENSAPLG00000010176

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010671

70440699 - 70478410

37712