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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70458366_70459468_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70458366 - 70459468
Intron Length:
1103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAACT
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
TGCAGTATAATT
Flanking Amino Acid:
RMKIPESLEEDQQFILKKSP
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
78.1
36.3
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
41.7
-0.9
2.9
59.3
44.8
Minor BPS
45.3
-0.2
2
61.88
42.5

Associated Gene:

Gene:
SEC63
Ensembl Gene ID:
ENSAPLG00000010176
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010671
70440699 - 70478410
37712