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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70466985_70468571_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70466985 - 70468571
Intron Length:
1587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTCTTTTATT
Flanking Amino Acid:
PHVTMDIKPQVLDDEDSNNI
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
63.6
48.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.7
0.87
0.7
81.4
34.9
Minor 5ss
33.2
-1.9
2.8
33.1
41.8
Minor BPS
69.5
0.7
1.6
83.31
38.3

Associated Gene:

Gene:
SEC63
Ensembl Gene ID:
ENSAPLG00000010176
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010671
70440699 - 70478410
37712