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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70470349_70470561_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70470349 - 70470561
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATATTTTAAAT
Flanking Amino Acid:
SAEEQPAEEGQGDSNKAKSK
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
38.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.8
0.9
0.7
84.5
30.1
Minor 5ss
39.1
-1.2
2.8
40.9
45.4
Minor BPS
61.3
0.43
1.4
73.38
36.9

Associated Gene:

Gene:
SEC63
Ensembl Gene ID:
ENSAPLG00000010176
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010671
70440699 - 70478410
37712