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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70471627_70472554_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70471627 - 70472554
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTGTCTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAATCTTTAAAT
Flanking Amino Acid:
DEKQNKDDEAEWQELQQSIQ
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
75.1
40.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.8
0.65
1
76
38
Minor 5ss
43.1
-0.8
3.2
69.3
40.9
Minor BPS
69.9
0.7
1.3
78.17
37.3

Associated Gene:

Gene:
SEC63
Ensembl Gene ID:
ENSAPLG00000010176
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010671
70440699 - 70478410
37712