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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70477493_70477974_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70477493 - 70477974
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATAAAT
5'SS Class:
major
3'SS Sequence:
CACCCAATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTCTCTTCACC
Flanking Amino Acid:
MGLDQSKPLKLEVHEAKPVP
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
0.9
78.7
29.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
66.6
0.37
0.9
57.9
35.9
Minor 5ss
29.8
-2.3
2.9
40
45.6
Minor BPS
67.3
0.53
1.7
79.35
35.8

Associated Gene:

Gene:
SEC63
Ensembl Gene ID:
ENSAPLG00000010176
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010671
70440699 - 70478410
37712