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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70519669_70521567_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70519669 - 70521567
Intron Length:
1899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
GCTTGCTCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
GGGTACTGAATT
Flanking Amino Acid:
KPGYGGEMVPVSASFEGKQH
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.9
42.9
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
75.8
0.58
0.9
65.7
41
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
53.7
0.19
1.7
67.85
42.5

Associated Gene:

Gene:
SCML4
Ensembl Gene ID:
ENSAPLG00000010070
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010488
70517516 - 70546186
28671