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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70521763_70534333_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70521763 - 70534333
Intron Length:
12571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTGA
5'SS Class:
major
3'SS Sequence:
GCTTGCTGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTACTTATATT
Flanking Amino Acid:
EVYENRRMEAETVVPEDYLV
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
65.9
42.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
63.3
0.3
1.1
58.5
41.9
Minor 5ss
41.8
-0.9
3.2
55.7
48.5
Minor BPS
50.7
0.1
2
76.16
40.9

Associated Gene:

Gene:
SCML4
Ensembl Gene ID:
ENSAPLG00000010070
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010488
70517516 - 70546186
28671