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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70583063_70595746_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
70583063 - 70595746
Intron Length:
12684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGTG
5'SS Class:
major
3'SS Sequence:
TTCTGCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TTCTGCTTCACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
70
40.5
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
81.2
0.7
0.8
75.6
33
Minor 5ss
38.7
-1.3
3
49.5
46.8
Minor BPS
58.4
0.26
2.2
74.7
43.3

Associated Gene:

Gene:
SOBP
Ensembl Gene ID:
ENSAPLG00000019216
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042232
70582912 - 70676252
93341
ENSAPLT00000035716
70582912 - 70676252
93341