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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70597702_70620494_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70597702 - 70620494
Intron Length:
22793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGAATA
5'SS Class:
major
3'SS Sequence:
TACTGTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTGCCTGATCT
Flanking Amino Acid:
LAFKNNCELLVCDWCKHIRH
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
75.5
33.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.2
0.48
1
65.4
40.8
Minor 5ss
39.6
-1.2
3.1
55.5
42.8
Minor BPS
56.3
0.27
1.9
76.58
45.8

Associated Gene:

Gene:
SOBP
Ensembl Gene ID:
ENSAPLG00000019216
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042232
70582912 - 70676252
93341