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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70620591_70654603_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70620591 - 70654603
Intron Length:
34013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
AGTCCCTAAATA
Flanking Amino Acid:
CRRAYFKRNKARDEDGHAEN
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
85.2
0.79
0.7
82.4
29.2
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
60.1
0.31
1.7
68.18
38.1

Associated Gene:

Gene:
SOBP
Ensembl Gene ID:
ENSAPLG00000019216
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042232
70582912 - 70676252
93341