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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7063026_7064783_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7063026 - 7064783
Intron Length:
1758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TATTACTAAACT
Flanking Amino Acid:
YKKKKHVFKLRLTDGNEYLF
Intron Amino Acid Position:
1998

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
75.1
41.1
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
89.8
0.89
0.7
84.7
30.1
Minor 5ss
37.2
-1.4
3.1
49.5
46.7
Minor BPS
67.7
0.63
1.8
86.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007461
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007827
7062426 - 7107116
44691