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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7064958_7066230_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7064958 - 7066230
Intron Length:
1273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTAC
5'SS Class:
major
3'SS Sequence:
CCATGTCCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTTGTTATTT
Flanking Amino Acid:
WETHSKKASSRSWHNVYCVI
Intron Amino Acid Position:
1940

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
63.3
37.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
61.1
0.25
1.1
60.2
35.5
Minor 5ss
35
-1.7
3.6
48.7
47.8
Minor BPS
56.6
0.28
2.2
82.89
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007461
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007827
7062426 - 7107116
44691