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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70654756_70664837_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70654756 - 70664837
Intron Length:
10082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATAT
Flanking Amino Acid:
IPPPFIKPPAEDDVSNVQIM
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
77.8
36.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82
0.72
0.8
77.7
36
Minor 5ss
36.2
-1.6
3.1
51.2
45.2
Minor BPS
63.7
0.51
1.7
80.66
41.2

Associated Gene:

Gene:
SOBP
Ensembl Gene ID:
ENSAPLG00000019216
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042232
70582912 - 70676252
93341
ENSAPLT00000035716
70582912 - 70676252
93341