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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_70666998_70675768_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70666998 - 70675768
Intron Length:
8771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATTACATAAATA
Flanking Amino Acid:
VKREINEEMKNFAENTMNEL
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
70.2
40.4
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
32.2
-2
3.7
45.9
49.3
Minor BPS
51.5
0.04
1.9
67.83
38.5

Associated Gene:

Gene:
SOBP
Ensembl Gene ID:
ENSAPLG00000019216
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042232
70582912 - 70676252
93341
ENSAPLT00000035716
70582912 - 70676252
93341