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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7072504_7074187_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7072504 - 7074187
Intron Length:
1684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AGTGCTTTAACA
Flanking Amino Acid:
RFAALERLTTLELLEVRRQQ
Intron Amino Acid Position:
1802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
85.8
0.8
0.7
84.4
30.1
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
71.1
0.66
1.3
74.34
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007461
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007827
7062426 - 7107116
44691